Initial analysis
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### Initial diagnostic
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This diagnostic used the file now at `bicorder_analyzed.json`, though the scripts are set up to analyze `../bicorder.json`. That file has since been updated based on this analysis.
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For each row in the dataset, and on each gradient, a series of scripts prompts the LLM to apply each gradient to the protocol. The outputs are then added to a CSV output file.
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The result was a CSV-formatted list of protocols (`diagnostic_output.csv`, n=411).
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analysis/bicorder_analyze.py
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analysis/bicorder_analyze.py
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analysis/bicorder_batch.py
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analysis/bicorder_batch.py
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analysis/bicorder_init.py
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analysis/bicorder_init.py
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analysis/bicorder_query.py
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analysis/bicorder_query.py
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analysis/chunk.sh
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analysis/chunk.sh
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analysis/multivariate_analysis.py
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analysis/multivariate_analysis.py
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