From fa527bd1f1fb32799c394e5cc226a33ca2a99b0b Mon Sep 17 00:00:00 2001 From: Nathan Schneider Date: Fri, 21 Nov 2025 19:34:33 -0700 Subject: [PATCH] Initial analysis --- .gitignore | 1 + analysis/README.md | 2 ++ analysis/bicorder_analyze.py | 0 analysis/bicorder_batch.py | 0 analysis/bicorder_init.py | 0 analysis/bicorder_query.py | 0 analysis/chunk.sh | 0 analysis/multivariate_analysis.py | 0 8 files changed, 3 insertions(+) mode change 100644 => 100755 analysis/bicorder_analyze.py mode change 100644 => 100755 analysis/bicorder_batch.py mode change 100644 => 100755 analysis/bicorder_init.py mode change 100644 => 100755 analysis/bicorder_query.py mode change 100755 => 100644 analysis/chunk.sh mode change 100644 => 100755 analysis/multivariate_analysis.py diff --git a/.gitignore b/.gitignore index ae8e047..82cafc1 100644 --- a/.gitignore +++ b/.gitignore @@ -1,2 +1,3 @@ tmp analysis/venv +.aider* diff --git a/analysis/README.md b/analysis/README.md index 445edb3..1d20ef2 100644 --- a/analysis/README.md +++ b/analysis/README.md @@ -46,6 +46,8 @@ The result was a CSV-formatted list of protocols (`protocols_edited.csv`, n=411) ### Initial diagnostic +This diagnostic used the file now at `bicorder_analyzed.json`, though the scripts are set up to analyze `../bicorder.json`. That file has since been updated based on this analysis. + For each row in the dataset, and on each gradient, a series of scripts prompts the LLM to apply each gradient to the protocol. The outputs are then added to a CSV output file. The result was a CSV-formatted list of protocols (`diagnostic_output.csv`, n=411). diff --git a/analysis/bicorder_analyze.py b/analysis/bicorder_analyze.py old mode 100644 new mode 100755 diff --git a/analysis/bicorder_batch.py b/analysis/bicorder_batch.py old mode 100644 new mode 100755 diff --git a/analysis/bicorder_init.py b/analysis/bicorder_init.py old mode 100644 new mode 100755 diff --git a/analysis/bicorder_query.py b/analysis/bicorder_query.py old mode 100644 new mode 100755 diff --git a/analysis/chunk.sh b/analysis/chunk.sh old mode 100755 new mode 100644 diff --git a/analysis/multivariate_analysis.py b/analysis/multivariate_analysis.py old mode 100644 new mode 100755