fix: ctrl+click, shared pill rendering, header layout — all in one

Three recurring issues fixed together:

1. Ctrl+click: All protocol and collection pills now use <a href>
   instead of <div onclick>, so ctrl/cmd+click opens in new tab.
   text-decoration:none and color:inherit prevent link styling.

2. Consistent modules: Shared renderProtocolPill() and
   renderCollectionPill() functions used everywhere — library,
   collections list, collection detail, user profile. All produce
   identical HTML with .protocol-grid wrapper for consistent spacing.
   Profile collections no longer have .icon divs.

3. Header layout: Logo (32px) on left with crumb-text wrapper.
   $ protocol-droid on first line, crumb path below it.
   Favicon links and PWA manifest restored.
   Relative paths (frontend/ not /frontend/) for subdirectory support.

frontend/app.js

@@ -297,16 +297,28 @@ function renderProtocolGrid(protocols) {
     grid.innerHTML = '<div class="empty">No protocols yet. <a href="#create" onclick="navigate(\'create\');return false">Create one</a></div>';
     return;
   }
-  grid.innerHTML = protocols.map(function(p) {
-    var sourceLabel = p.source || (p.author ? '@' + p.author : '');
-    var tags = (p.tags || []).map(function(t) { return '<span class="tag">' + escapeHtml(t) + '</span>'; }).join('');
-    return '<div class="protocol-pill" onclick="showDetail(\'' + p.slug + '\')">' +
-      '<div class="info"><h3>' + escapeHtml(p.title) + '</h3>' +
-      '<p>' + escapeHtml(p.description || '') + '</p>' +
-      (tags ? '<div class="tag-row">' + tags + '</div>' : '') + '</div>' +
-      '<div class="meta"><div class="steps">' + (p.steps || []).length + ' steps</div>' +
-      '<div>' + escapeHtml(sourceLabel) + '</div></div></div>';
-  }).join('');
+  grid.innerHTML = protocols.map(renderProtocolPill).join('');
+}
+
+// --- Shared rendering (use everywhere for consistency) ---
+function renderProtocolPill(p) {
+  var sourceLabel = p.source || (p.author ? '@' + p.author : '');
+  var tags = (p.tags || []).map(function(t) { return '<span class="tag">' + escapeHtml(t) + '</span>'; }).join('');
+  return '<a class="protocol-pill" href="#protocols/' + p.slug + '">' +
+    '<div class="info"><h3>' + escapeHtml(p.title) + '</h3>' +
+    '<p>' + escapeHtml(p.description || '') + '</p>' +
+    (tags ? '<div class="tag-row">' + tags + '</div>' : '') + '</div>' +
+    '<div class="meta"><div class="steps">' + (p.steps || []).length + ' steps</div>' +
+    (sourceLabel ? '<div>' + escapeHtml(sourceLabel) + '</div>' : '') + '</div></a>';
+}
+
+function renderCollectionPill(c) {
+  var sourceLabel = c.source || (c.author ? '@' + c.author : '');
+  return '<a class="protocol-pill collection" href="#collections/' + c.slug + '">' +
+    '<div class="info"><h3>' + escapeHtml(c.title) + '</h3>' +
+    '<p>' + escapeHtml(c.description || '') + '</p></div>' +
+    '<div class="meta"><div class="steps">' + (c.item_count || 0) + ' protocols</div>' +
+    (sourceLabel ? '<div>' + escapeHtml(sourceLabel) + '</div>' : '') + '</div></a>';
 }
 
 // (iconFor removed — icons are no longer used)
@@ -563,12 +575,7 @@ async function loadCollections() {
       grid.innerHTML = '<div class="empty">No collections yet. <a href="#" onclick="navigate(\'create-collection\');return false">Create one</a></div>';
       return;
     }
-    grid.innerHTML = collections.map(function(c) {
-      var sourceLabel = c.author ? '@' + c.author : (c.source || '');
-      return '<div class="protocol-pill collection" onclick="showCollectionDetail(\'' + c.slug + '\')">' +
-        '<div class="info"><h3>' + escapeHtml(c.title) + '</h3><p>' + escapeHtml(c.description || '') + '</p></div>' +
-        '<div class="meta"><div class="steps">' + (c.item_count || 0) + ' protocols</div><div>' + escapeHtml(sourceLabel) + '</div></div></div>';
-    }).join('');
+    grid.innerHTML = collections.map(renderCollectionPill).join('');
   } catch (e) {
     document.getElementById('collectionsGrid').innerHTML = '<div class="empty">' + escapeHtml(e.message) + '</div>';
   }
@@ -729,11 +736,7 @@ async function showCollectionDetail(slug) {
       if (item.type === 'protocol') {
         try {
           var p = await api('/protocols/' + item.slug);
-          itemsHtml += '<div class="protocol-pill" onclick="showDetail(\'' + p.slug + '\')">' +
-            '<div class="info"><h3>' + escapeHtml(p.title) + '</h3>' +
-            '<p>' + escapeHtml(p.description || '') + '</p>' +
-            (p.tags && p.tags.length ? '<div class="tag-row">' + p.tags.map(function(t) { return '<span class="tag">' + escapeHtml(t) + '</span>'; }).join('') + '</div>' : '') + '</div>' +
-            '<div class="meta"><div class="steps">' + (p.steps || []).length + ' steps</div></div></div>';
+          itemsHtml += renderProtocolPill(p);
         } catch (e2) {
           itemsHtml += '<div class="protocol-pill"><div class="info"><h3>' + escapeHtml(item.slug) + '</h3><p>Protocol not found</p></div></div>';
         }
@@ -800,21 +803,12 @@ async function showUser(username) {
       '<div class="profile-card"><h2>@' + escapeHtml(data.user.username) + '</h2>' +
       (data.user.display_name ? '<div class="bio">' + escapeHtml(data.user.display_name) + '</div>' : '') +
       (data.user.bio ? '<div class="bio">' + escapeHtml(data.user.bio) + '</div>' : '') + '</div>' +
-      (p.length ? '<div class="detail-section"><h2>Protocols (' + p.length + ')</h2>' +
-        p.map(function(proto) {
-          return '<div class="protocol-pill" onclick="showDetail(\'' + proto.slug + '\')">' +
-          '<div class="info"><h3>' + escapeHtml(proto.title) + '</h3>' +
-          '<p>' + escapeHtml(proto.description||'') + '</p>' +
-          (proto.tags && proto.tags.length ? '<div class="tag-row">' + proto.tags.map(function(t) { return '<span class="tag">' + escapeHtml(t) + '</span>'; }).join('') + '</div>' : '') + '</div>' +
-          '<div class="meta"><div class="steps">' + (proto.steps || []).length + ' steps</div></div></div>';
-        }).join('') +
-        '</div>' : '') +
-      (c.length ? '<div class="detail-section"><h2>Collections (' + c.length + ')</h2>' +
-        c.map(function(col) {
-          return '<div class="protocol-pill collection" onclick="showCollectionDetail(\'' + col.slug + '\')"><div class="icon">[+]</div>' +
-          '<div class="info"><h3>' + escapeHtml(col.title) + '</h3><p>' + escapeHtml(col.description||'') + '</p></div></div>';
-        }).join('') +
-        '</div>' : '');
+      (p.length ? '<div class="detail-section"><h2>Protocols (' + p.length + ')</h2><div class="protocol-grid">' +
+        p.map(renderProtocolPill).join('') +
+        '</div></div>' : '') +
+      (c.length ? '<div class="detail-section"><h2>Collections (' + c.length + ')</h2><div class="protocol-grid">' +
+        c.map(renderCollectionPill).join('') +
+        '</div></div>' : '');
     // Add actions if viewing own profile
     var actionsHtml = '';
     if (currentUser && currentUser.username === username) {

frontend/index.html

@@ -4,15 +4,22 @@
 <meta charset="UTF-8">
 <meta name="viewport" content="width=device-width, initial-scale=1.0">
 <title>Protocol Droid</title>
-<link rel="stylesheet" href="/frontend/style.css">
+<link rel="icon" type="image/svg+xml" href="frontend/logo.svg">
+<link rel="icon" type="image/x-icon" href="frontend/favicon.ico">
+<link rel="apple-touch-icon" href="frontend/icon-192.png">
+<link rel="manifest" href="manifest.json">
+<link rel="stylesheet" href="frontend/style.css">
 <meta name="theme-color" content="#0a1929">
 </head>
 <body>
 
 <header>
   <div class="breadcrumb" onclick="navigate('library')">
-    <span><span class="prompt">$</span> protocol-droid</span>
-    <span class="crumb-path" id="crumbPath"></span>
+    <img src="frontend/logo.svg" class="header-logo" alt="">
+    <div class="crumb-text">
+      <span><span class="prompt">$</span> protocol-droid</span>
+      <span class="crumb-path" id="crumbPath"></span>
+    </div>
   </div>
   <nav id="navBar">
     <a href="#library" class="active" data-view="library">PROTOCOLS</a>
@@ -259,6 +266,6 @@
 
 </main>
 
-<script src="/frontend/app.js"></script>
+<script src="frontend/app.js"></script>
 </body>
 </html>

frontend/style.css

@@ -238,8 +238,9 @@ header nav a.active { color: var(--accent-bright); border-color: rgba(0,170,255,
   background: var(--surface); border: 1px solid var(--border-light);
   border-radius: 16px; padding: 14px 20px; display: flex; align-items: flex-start;
   gap: 14px; cursor: pointer; transition: all 0.15s; box-shadow: var(--shadow);
+  text-decoration: none; color: inherit;
 }
-.protocol-pill:hover { border-color: var(--accent); box-shadow: var(--shadow-hover); transform: translateX(2px); }
+.protocol-pill:hover { border-color: var(--accent); box-shadow: var(--shadow-hover); transform: translateX(2px); text-decoration: none; }
 .protocol-pill .icon {
   width: 38px; height: 38px; border-radius: 10px; background: var(--panel);
   display: flex; align-items: center; justify-content: center;