docs: mark classifier integration historical; fix shortform count
- INTEGRATION_GUIDE.md: rewritten as research notes — how to reproduce the cluster classification with the analysis scripts, and why it was removed from the tool in v1.3.0 - analysis/README.md: integration section marked historical - bicorder-app/README.md: shortform is 9 gradients, not 10
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# Bicorder Classifier Integration Guide
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# Bicorder Classifier — Research Notes
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> **Status: removed from the tool (v1.3.0).** The formal/informal (bureaucratic↔relational)
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> LDA analysis was removed from the bicorder itself in v1.3.0. The cluster
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> classification survives as **research only** — the scripts in this directory
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> can still train and apply the model to datasets, but the web app and
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> `ascii_bicorder.py` no longer consume it. This document is retained as a
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> historical record of how the integration worked and how to reproduce the
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> research analysis.
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## Overview
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This guide explains how to integrate the cluster classification system into the Bicorder web application to provide:
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The analysis directory contains a cluster classification system that was
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previously integrated into the Bicorder web application to provide:
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1. **Real-time cluster prediction** as users fill out diagnostics
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1. **Real-time cluster prediction** as users filled out diagnostics
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2. **Smart form selection** (short vs. long form based on classification confidence)
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3. **Visual feedback** showing protocol family positioning
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## Design Philosophy
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## Original Design Philosophy
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**Version-based compatibility**: The model includes a `bicorder_version` field. The classifier checks that versions match. When bicorder.json structure changes:
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1. Increment the version number in bicorder.json
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2. Retrain the model with `python3 scripts/export_model_for_js.py data/synthetic_20251116/readings.csv`
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3. The new model will have the updated version
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**Version-based compatibility**: The model included a `bicorder_version` field.
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The classifier checked that versions matched. When bicorder.json structure changed:
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1. The version number in bicorder.json was incremented
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2. The model was retrained with `python3 scripts/export_model_for_js.py data/synthetic_20251116/readings.csv`
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3. The new model had the updated version
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This ensures the web app and model stay in sync without complex backward compatibility.
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## Files (research-only now)
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## Files
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- `bicorder_model.json` - Trained model parameters (~5KB), trained on the synthetic dataset (bicorder v1.2.6 structure — **stale** relative to v1.3.0; retrain before applying to new readings)
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- `scripts/bicorder_classifier.py` - Python classifier (used by `classify_readings.py`)
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- `scripts/export_model_for_js.py` - Retrain and export the model to JSON
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- `scripts/classify_readings.py` - Apply the classifier to a readings CSV
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- `bicorder_model.json` - Trained model parameters (~5KB); read by `bicorder-app` at build time from `../analysis/bicorder_model.json`
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- `bicorder-app/src/bicorder-classifier.ts` - TypeScript classifier implementation (lives in the app, not here)
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The model is the only artifact produced by this analysis directory that the app consumes. Regenerate it after re-running analysis on the synthetic dataset:
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## Reproducing the research analysis
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```bash
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python3 scripts/export_model_for_js.py data/synthetic_20251116/readings.csv
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# Retrain the model on a (new) synthetic dataset
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python3 scripts/export_model_for_js.py data/<dataset>/readings.csv
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# Classify a dataset's readings
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python3 scripts/classify_readings.py data/<dataset>/readings.csv --training data/<dataset>/readings.csv
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```
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## Quick Start
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### Basic Usage
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```javascript
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import { loadClassifier } from './lib/bicorder-classifier.js';
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// Load model once at app startup
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const classifier = await loadClassifier('/bicorder_model.json');
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// As user fills in diagnostic form
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function onDimensionChange(dimensionName, value) {
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const currentRatings = getCurrentFormValues(); // Your form state
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const result = classifier.predict(currentRatings);
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console.log(`Cluster: ${result.clusterName}`);
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console.log(`Confidence: ${result.confidence}%`);
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console.log(`Recommend: ${result.recommendedForm} form`);
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updateUI(result);
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}
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```
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## Integration Patterns
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### Pattern 1: Progressive Classification Display
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Show classification results as the user fills out the form:
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```javascript
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// React/Svelte component example
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function DiagnosticForm() {
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const [ratings, setRatings] = useState({});
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const [classification, setClassification] = useState(null);
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useEffect(() => {
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if (Object.keys(ratings).length > 0) {
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const result = classifier.predict(ratings);
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setClassification(result);
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}
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}, [ratings]);
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return (
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<div>
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<DiagnosticQuestions onChange={setRatings} />
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{classification && (
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<ClassificationIndicator
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cluster={classification.clusterName}
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confidence={classification.confidence}
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completeness={classification.completeness}
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/>
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)}
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</div>
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);
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}
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```
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### Pattern 2: Smart Form Selection
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Automatically switch between short and long forms:
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```javascript
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function DiagnosticWizard() {
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const [ratings, setRatings] = useState({});
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function handleDimensionComplete(dimension, value) {
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const newRatings = { ...ratings, [dimension]: value };
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setRatings(newRatings);
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// Check if we should switch forms
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const result = classifier.predict(newRatings);
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if (result.recommendedForm === 'long' && currentForm === 'short') {
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showFormSwitchPrompt(
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'Your protocol shows characteristics of both families. ' +
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'Would you like to use the detailed form for better classification?'
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);
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}
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}
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return <Form onDimensionComplete={handleDimensionComplete} />;
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}
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```
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### Pattern 3: Short Form Optimization
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Only ask the 8 most discriminative dimensions for quick classification:
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```javascript
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const shortFormDimensions = classifier.getKeyDimensions();
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// Returns:
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// [
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// 'Design_elite_vs_vernacular',
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// 'Entanglement_flocking_vs_swarming',
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// 'Design_static_vs_malleable',
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// 'Entanglement_obligatory_vs_voluntary',
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// 'Entanglement_self-enforcing_vs_enforced',
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// 'Design_explicit_vs_implicit',
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// 'Entanglement_sovereign_vs_subsidiary',
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// 'Design_technical_vs_social',
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// ]
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function ShortForm() {
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return (
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<div>
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<h2>Quick Classification (8 questions)</h2>
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{shortFormDimensions.map(dim => (
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<DimensionSlider key={dim} dimension={dim} />
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))}
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</div>
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);
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}
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```
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### Pattern 4: Readiness Check
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Check if user has provided enough data for reliable classification:
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```javascript
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function ClassificationStatus() {
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const assessment = classifier.assessShortFormReadiness(ratings);
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if (!assessment.ready) {
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return (
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<div className="status-warning">
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<p>
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Need {assessment.keyDimensionsTotal - assessment.keyDimensionsProvided} more
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key dimensions for reliable classification ({assessment.coverage}% complete)
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</p>
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<ul>
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{assessment.missingKeyDimensions.slice(0, 3).map(dim => (
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<li key={dim}>{formatDimensionName(dim)}</li>
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))}
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</ul>
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</div>
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);
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}
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return <ClassificationResult result={classifier.predict(ratings)} />;
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}
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```
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## UI Components
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### Classification Indicator
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Visual indicator showing cluster and confidence:
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```javascript
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function ClassificationIndicator({ cluster, confidence, completeness }) {
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const color = cluster === 1 ? '#2E86AB' : '#A23B72';
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return (
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<div className="classification-indicator" style={{ borderColor: color }}>
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<div className="cluster-badge" style={{ backgroundColor: color }}>
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{cluster === 1 ? 'Relational/Cultural' : 'Institutional/Bureaucratic'}
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</div>
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<div className="confidence-bar">
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<div
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className="confidence-fill"
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style={{
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width: `${confidence}%`,
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backgroundColor: color,
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opacity: 0.3 + (confidence / 100) * 0.7,
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}}
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/>
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<span className="confidence-text">{confidence}% confidence</span>
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</div>
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<div className="completeness">
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{completeness}% of dimensions provided
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</div>
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</div>
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);
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}
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```
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### Spectrum Visualization
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Show protocol position on the relational ↔ institutional spectrum:
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```javascript
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function SpectrumVisualization({ ldaScore, distanceToBoundary }) {
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// Scale LDA score to 0-100 for display
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// Typical range is -4 to +4
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const position = ((ldaScore + 4) / 8) * 100;
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const boundaryZone = distanceToBoundary < 0.5;
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return (
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<div className="spectrum">
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<div className="spectrum-bar">
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<div className="spectrum-label left">Relational/Cultural</div>
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<div className="spectrum-label right">Institutional/Bureaucratic</div>
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<div className="spectrum-track">
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{boundaryZone && (
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<div className="boundary-zone" style={{ left: '45%', width: '10%' }}>
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Boundary
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</div>
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)}
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<div
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className="protocol-marker"
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style={{ left: `${position}%` }}
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title={`LDA Score: ${ldaScore.toFixed(2)}`}
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/>
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</div>
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</div>
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</div>
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);
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}
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```
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## Form Selection Logic
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### When to Use Short Form
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- Initial protocol scan
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- User wants quick classification
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- Protocol clearly fits one family (confidence > 60%, distance > 0.5)
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### When to Use Long Form
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- Protocol near boundary (distance < 0.5)
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- Low confidence (< 60%)
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- User wants detailed analysis
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- Research/documentation purposes
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### Recommended Flow
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```
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User starts diagnostic
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↓
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Show short form (8 key dimensions)
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↓
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Calculate partial classification
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↓
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Is confidence > 60% AND completeness > 75%?
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↓ YES ↓ NO
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Show result Offer long form
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"For better accuracy,
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complete full diagnostic?"
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```
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## API Reference
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### `predict(ratings, options)`
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Main classification function.
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**Parameters:**
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- `ratings`: Object mapping dimension names to values (1-9)
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- `options.detailed`: Return detailed information (default: true)
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**Returns:**
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```javascript
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{
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cluster: 1 | 2,
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clusterName: "Relational/Cultural" | "Institutional/Bureaucratic",
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confidence: 0-100,
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completeness: 0-100,
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recommendedForm: "short" | "long",
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// If detailed: true
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ldaScore: number,
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distanceToBoundary: number,
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dimensionsProvided: number,
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dimensionsTotal: 23,
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keyDimensionsProvided: number,
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keyDimensionsTotal: 8
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}
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```
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### `explainClassification(ratings)`
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Generate human-readable explanation.
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**Returns:** String with explanation text
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### `getKeyDimensions()`
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Get the 8 most discriminative dimensions for short form.
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**Returns:** Array of dimension names
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### `assessShortFormReadiness(ratings)`
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Check if enough key dimensions are provided.
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**Returns:**
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```javascript
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{
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ready: boolean,
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keyDimensionsProvided: number,
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keyDimensionsTotal: 8,
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coverage: 0-100,
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missingKeyDimensions: string[]
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}
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```
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## Testing
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Test the classifier with example protocols (run from within `bicorder-app`):
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```javascript
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import { BicorderClassifier } from './bicorder-classifier';
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import modelData from '../../analysis/bicorder_model.json';
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const classifier = new BicorderClassifier(modelData);
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// Test 1: Clearly institutional
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const institutional = {
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'Design_elite_vs_vernacular': 1,
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'Entanglement_obligatory_vs_voluntary': 1,
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'Entanglement_flocking_vs_swarming': 1,
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};
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console.log(classifier.predict(institutional));
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// Expected: Cluster 2, high confidence
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// Test 2: Clearly relational
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const relational = {
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'Design_elite_vs_vernacular': 9,
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'Entanglement_obligatory_vs_voluntary': 9,
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'Entanglement_flocking_vs_swarming': 9,
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};
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console.log(classifier.predict(relational));
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// Expected: Cluster 1, high confidence
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// Test 3: Boundary case
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const boundary = {
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'Design_elite_vs_vernacular': 5,
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'Entanglement_obligatory_vs_voluntary': 5,
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};
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console.log(classifier.predict(boundary));
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// Expected: Recommend long form
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```
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## Performance
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- Model size: ~5KB (negligible)
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- Classification time: < 1ms
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- No network calls needed (runs entirely client-side)
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- Works offline once model is loaded
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## Next Steps
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1. Integrate classifier into existing bicorder form
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2. Design UI components for classification display
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3. Add user preference for form selection
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4. Consider adding classification to protocol browsing/search
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5. Export classification data with completed diagnostics
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## Questions?
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See `bicorder-app/src/bicorder-classifier.ts` for the live implementation, and `bicorder-app/src/App.svelte` for how it's wired into the form.
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The classifier predicts which of two protocol families a reading belongs to:
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- **Cluster 1: Relational/Cultural** — community-based, emergent, voluntary protocols
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- **Cluster 2: Institutional/Bureaucratic** — formal, top-down, externally enforced protocols
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See `analysis/README.md` for the full multivariate analysis these clusters came from.
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## Historical integration patterns
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The removed web-app integration supported progressive classification display,
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smart form selection (suggesting the long form when classification confidence
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was low), short-form optimization around the most discriminative dimensions,
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and readiness checks. The Python classifier API remains:
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- `predict(ratings, options)` → cluster, clusterName, confidence, completeness, recommendedForm (detailed mode adds ldaScore, distanceToBoundary, dimension counts)
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- `explain_classification(ratings)` → human-readable explanation
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- `get_key_dimensions()` → the shortform/key dimensions from bicorder.json
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- `assess_short_form_readiness(ratings)` (TS only, removed) — the Python `recommended_form` field remains
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The shortform gradients themselves are defined in `bicorder.json`
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(`shortform: true`), derived from the original feature-importance analysis —
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that part of the research lives on in the tool.
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## Why it was removed
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- The LDA sign convention was inverted in `ascii_bicorder.py` (never caught
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there because a term-rename also silently disabled the calculation), while
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the web app had been separately fixed — two divergent implementations.
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- Compressing a two-family classification into a 1–9 gradient was semantically
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awkward and produced recurring bugs (see commit `fd556d9`).
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- The version-mismatch handling differed between implementations (Python
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skipped; TypeScript continued with a stale model).
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- The two-families finding is a research result, not a diagnostic — it belongs
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in analysis, not in the instrument itself.
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The form-recommendation feature (suggesting long form when classification
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confidence was low) was also removed. Shortform/longform selection is now
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entirely the analyst's choice.
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+7
-2
@@ -416,9 +416,14 @@ Hypothesis: Changing the analyst and their standpoint could result in interestin
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Method: Alongside the dataset of protocols, generate diverse personas, such as a) personas used to evaluate every protocols, and b) protocol-specific personas that reflect different relationships to the protocol. Modify the test suite to include personas as an additional dimension of the analysis.
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## Integration with Bicorder Tool
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## Integration with Bicorder Tool (historical)
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The cluster analysis findings have been integrated into the bicorder system as an automated analysis gradient:
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> **Update (v1.3.0):** The bureaucratic↔relational (formal/informal) LDA analysis
|
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> has been **removed from the bicorder itself**. The cluster classification lives
|
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> on as research in this directory only — see `INTEGRATION_GUIDE.md` for how to
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> reproduce it and why it was removed from the tool.
|
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|
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The cluster analysis findings were previously integrated into the bicorder system as an automated analysis gradient:
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**Bureaucratic ↔ Relational** - A new analysis field that automatically calculates where a protocol falls on the spectrum between the two protocol families identified through clustering analysis.
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@@ -6,7 +6,7 @@ A Svelte Progressive Web App (PWA) for carrying out protocol diagnostics as defi
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- **Single-page diagnostic tool** with ASCII-styled interface
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- **Touch-friendly controls** optimized for mobile devices
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- **Shortform toggle** - switch between full (23 gradients) and short (10 gradients) versions
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- **Shortform toggle** - switch between full (23 gradients) and short (9 gradients) versions
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- **Tooltips** on all gradient terms (long-press on mobile, hover on desktop)
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- **Editable metadata** fields with auto-generated timestamps
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- **Auto-calculated analysis** section (hardness/softness, polarized/centrist)
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Reference in new issue
Block a user