Initial analysis complete

analysis/analysis_results/reports/analysis_summary.txt

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+================================================================================
+MULTIVARIATE ANALYSIS SUMMARY REPORT
+Protocol Bicorder Dataset
+================================================================================
+
+Dataset: diagnostic_output.csv
+Number of protocols: 406
+Number of dimensions: 23
+  - Design: 8
+  - Entanglement: 8
+  - Experience: 7
+
+--------------------------------------------------------------------------------
+ANALYSES PERFORMED
+--------------------------------------------------------------------------------
+K-Means: 2 clusters identified
+Hierarchical: 5 clusters
+DBSCAN: 281 outlier protocols identified
+
+Dimensionality Reduction:
+- Principal Component Analysis (PCA)
+- t-SNE Projection
+- UMAP Projection
+- Factor Analysis
+
+Statistical Analyses:
+- Correlation Analysis
+- Network Analysis
+- Feature Importance Analysis
+- Analyst Comparison
+
+--------------------------------------------------------------------------------
+OUTPUT FILES
+--------------------------------------------------------------------------------
+All results saved to: analysis_results/
+  - plots/ : All visualizations (PNG)
+  - data/ : All numerical results (CSV)
+  - reports/ : This summary report
+
+================================================================================
+END OF REPORT
+================================================================================