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Flatten data/readings/ → data/

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Remove the intermediate readings/ subdirectory level — dataset naming
(synthetic_YYYYMMDD, manual_YYYYMMDD) already encodes what the data is.
Update all path references across scripts and docs accordingly.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
This commit is contained in:
Nathan Schneider
2026-03-20 17:46:23 -06:00
parent 1a80219a25
commit 60e83783ec
533 changed files with 97 additions and 97 deletions
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8
analysis/scripts/multivariate_analysis.py
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@@ -764,13 +764,13 @@ def main():
formatter_class=argparse.RawDescriptionHelpFormatter,
epilog="""
Examples:
python3 scripts/multivariate_analysis.py data/readings/synthetic_20251116/readings.csv
python3 scripts/multivariate_analysis.py data/readings/synthetic_20251116/readings.csv --output data/readings/synthetic_20251116/analysis
python3 scripts/multivariate_analysis.py data/readings/synthetic_20251116/readings.csv --analyses clustering pca
python3 scripts/multivariate_analysis.py data/synthetic_20251116/readings.csv
python3 scripts/multivariate_analysis.py data/synthetic_20251116/readings.csv --output data/synthetic_20251116/analysis
python3 scripts/multivariate_analysis.py data/synthetic_20251116/readings.csv --analyses clustering pca
"""
)
parser.add_argument('csv_file', help='Diagnostic readings CSV (e.g. data/readings/synthetic_20251116/readings.csv)')
parser.add_argument('csv_file', help='Diagnostic readings CSV (e.g. data/synthetic_20251116/readings.csv)')
parser.add_argument('--output', '-o', default=None,
help='Output directory (default: <dataset_dir>/analysis)')
parser.add_argument('--min-coverage', type=float, default=0.0,